// POV-Ray ray tracer scene file, generated by Swiss-PdbViewer  3.70
// 100 100 n 1
// File:C:\Documents and Settings\Administrator\My Documents\public_html\Notebook\Biochemistry\molecules\test.pov
// Swiss-PdbViewer can be retrieved by anonymous ftp at:
// http://www.expasy.ch/spdbv/
//
// POV-Ray can be retrieved at: http://www.povray.org
// Mega POV can be retrieved at: http://nathan.kopp.com/patched.htm 
// N.Guex, 1995-2000
//
#version 3    // this scene uses POV-Ray 3.x syntax

#include "colors.inc"
#include "textures.inc"

// ------ COLORS ---------

#declare ATM_FINISH = finish {specular 0.9 roughness 0.001 ambient rgb <0.3,0.3,0.3> }
#declare RIBBON_FINISH = finish {specular 0.9 roughness 0.001 ambient rgb <0.3,0.3,0.3>}
#declare SURF_FINISH = finish {specular 0.9 roughness 0.001 ambient rgb <0.3,0.3,0.3>}
#declare EDM1_tex = texture {pigment {colour red 0.490 green 0.000 blue 0.000 } finish {specular 1 roughness 0.001}}
#declare EDM2_tex = texture {pigment {colour red 0.490 green 0.490 blue 0.490 } finish {specular 1 roughness 0.001}}
#declare N_tex = texture { pigment { colour red 0.231 green 0.318 blue 1.000 } finish{ ATM_FINISH }}
#declare C_tex = texture { pigment { colour red 1.000 green 1.000 blue 1.000 } finish{ ATM_FINISH }}
#declare O_tex = texture { pigment { colour red 1.000 green 0.000 blue 0.000 } finish{ ATM_FINISH }}
#declare P_tex = texture { pigment { colour red 1.000 green 0.659 blue 0.078 } finish{ ATM_FINISH }}
#declare H_tex = texture { pigment { colour red 0.290 green 0.800 blue 1.000 } finish{ ATM_FINISH }}
#declare S_tex = texture { pigment { colour red 1.000 green 0.929 blue 0.000 } finish{ ATM_FINISH }}
#declare X_tex = texture { pigment { colour red 0.624 green 0.624 blue 0.624 } finish{ ATM_FINISH }}
#declare SSBnd_tex = texture { pigment { colour red 1.000 green 0.929 blue 0.000 } finish{ ATM_FINISH }}
#declare HBnd_tex = texture { pigment { colour red 0.000 green 1.000 blue 0.000 filter 0.0} finish{ ATM_FINISH }}
#declare WkHBnd_tex = texture { pigment { colour red 0.561 green 0.678 blue 0.561 filter 0.0} finish{ ATM_FINISH }}
#declare Clash_tex = texture { pigment { colour red 1.000 green 0.424 blue 1.000 filter 0.0} finish{ ATM_FINISH }}

// ------ Bonds radii ---------

#declare rRIBN = 0.06   // flat Ribbon radius
#declare rEDM = 0.025   // EDM cylinder radius
#declare rSURF = 0.025   // SURFACE cylinder radius (when not filled surf.)
#declare r_Atm = 0.400   // atom radius
#declare r_Bnd = 0.200   // bond radius
#declare r_HBnd = 0.075   // H-bond radius
#declare CA_relativeSize = 1.000   // enlargement factor for CA

 #declare rDOT_SURF = 0.05 // radius for accessible surf. dots.

 #declare VDW_factor = 0.400   // changing this value will alter the radius of "joining" atoms

// ---- Radius for  atoms ----
// ---- Radius for "spacefilled" atoms end with '_' ----
 #declare rH = 1.00 * VDW_factor
 #declare rH_ = 1.10
 #declare rHe = 1.00 * VDW_factor
 #declare rHe_ = 1.10
 #declare rLi = 1.00 * VDW_factor
 #declare rLi_ = 1.10
 #declare rBe = 1.00 * VDW_factor
 #declare rBe_ = 1.10
 #declare rB = 1.00 * VDW_factor
 #declare rB_ = 1.10
 #declare rC = 1.00 * VDW_factor
 #declare rC_ = 1.70
 #declare rN = 1.00 * VDW_factor
 #declare rN_ = 1.50
 #declare rO = 1.00 * VDW_factor
 #declare rO_ = 1.40
 #declare rF = 1.00 * VDW_factor
 #declare rF_ = 1.10
 #declare rNe = 1.00 * VDW_factor
 #declare rNe_ = 1.10
 #declare rNa = 1.00 * VDW_factor
 #declare rNa_ = 1.10
 #declare rMg = 1.00 * VDW_factor
 #declare rMg_ = 1.10
 #declare rAl = 1.00 * VDW_factor
 #declare rAl_ = 1.10
 #declare rSi = 1.00 * VDW_factor
 #declare rSi_ = 1.10
 #declare rP = 1.00 * VDW_factor
 #declare rP_ = 1.90
 #declare rS = 1.00 * VDW_factor
 #declare rS_ = 1.85
 #declare rCl = 1.00 * VDW_factor
 #declare rCl_ = 1.10
 #declare rAr = 1.00 * VDW_factor
 #declare rAr_ = 1.10
 #declare rK = 1.00 * VDW_factor
 #declare rK_ = 1.10
 #declare rCa = 1.00 * VDW_factor
 #declare rCa_ = 1.10
 #declare rSc = 1.00 * VDW_factor
 #declare rSc_ = 1.10
 #declare rTi = 1.00 * VDW_factor
 #declare rTi_ = 1.10
 #declare rV = 1.00 * VDW_factor
 #declare rV_ = 1.10
 #declare rCr = 1.00 * VDW_factor
 #declare rCr_ = 1.10
 #declare rMn = 1.00 * VDW_factor
 #declare rMn_ = 1.10
 #declare rFe = 1.00 * VDW_factor
 #declare rFe_ = 1.10
 #declare rCo = 1.00 * VDW_factor
 #declare rCo_ = 1.10
 #declare rNi = 1.00 * VDW_factor
 #declare rNi_ = 1.10
 #declare rCu = 1.00 * VDW_factor
 #declare rCu_ = 1.10
 #declare rZn = 1.00 * VDW_factor
 #declare rZn_ = 1.10
 #declare rGa = 1.00 * VDW_factor
 #declare rGa_ = 1.10
 #declare rGe = 1.00 * VDW_factor
 #declare rGe_ = 1.10
 #declare rAs = 1.00 * VDW_factor
 #declare rAs_ = 1.10
 #declare rSe = 1.00 * VDW_factor
 #declare rSe_ = 1.10
 #declare rBr = 1.00 * VDW_factor
 #declare rBr_ = 1.10
 #declare rKr = 1.00 * VDW_factor
 #declare rKr_ = 1.10
 #declare rRb = 1.00 * VDW_factor
 #declare rRb_ = 1.10
 #declare rSr = 1.00 * VDW_factor
 #declare rSr_ = 1.10
 #declare rY = 1.00 * VDW_factor
 #declare rY_ = 1.10
 #declare rZr = 1.00 * VDW_factor
 #declare rZr_ = 1.10
 #declare rNb = 1.00 * VDW_factor
 #declare rNb_ = 1.10
 #declare rMo = 1.00 * VDW_factor
 #declare rMo_ = 1.10
 #declare rTc = 1.00 * VDW_factor
 #declare rTc_ = 1.10
 #declare rRu = 1.00 * VDW_factor
 #declare rRu_ = 1.10
 #declare rRh = 1.00 * VDW_factor
 #declare rRh_ = 1.10
 #declare rPd = 1.00 * VDW_factor
 #declare rPd_ = 1.10
 #declare rAg = 1.00 * VDW_factor
 #declare rAg_ = 1.10
 #declare rCd = 1.00 * VDW_factor
 #declare rCd_ = 1.10
 #declare rIn = 1.00 * VDW_factor
 #declare rIn_ = 1.10
 #declare rSn = 1.00 * VDW_factor
 #declare rSn_ = 1.10
 #declare rSb = 1.00 * VDW_factor
 #declare rSb_ = 1.10
 #declare rTe = 1.00 * VDW_factor
 #declare rTe_ = 1.10
 #declare rI = 1.00 * VDW_factor
 #declare rI_ = 1.10
 #declare rXe = 1.00 * VDW_factor
 #declare rXe_ = 1.10
 #declare rCs = 1.00 * VDW_factor
 #declare rCs_ = 1.10
 #declare rBa = 1.00 * VDW_factor
 #declare rBa_ = 1.10
 #declare rLa = 1.00 * VDW_factor
 #declare rLa_ = 1.10
 #declare rCe = 1.00 * VDW_factor
 #declare rCe_ = 1.10
 #declare rPr = 1.00 * VDW_factor
 #declare rPr_ = 1.10
 #declare rNd = 1.00 * VDW_factor
 #declare rNd_ = 1.10
 #declare rPm = 1.00 * VDW_factor
 #declare rPm_ = 1.10
 #declare rSm = 1.00 * VDW_factor
 #declare rSm_ = 1.10
 #declare rEu = 1.00 * VDW_factor
 #declare rEu_ = 1.10
 #declare rGd = 1.00 * VDW_factor
 #declare rGd_ = 1.10
 #declare rTb = 1.00 * VDW_factor
 #declare rTb_ = 1.10
 #declare rDy = 1.00 * VDW_factor
 #declare rDy_ = 1.10
 #declare rHo = 1.00 * VDW_factor
 #declare rHo_ = 1.10
 #declare rEr = 1.00 * VDW_factor
 #declare rEr_ = 1.10
 #declare rTm = 1.00 * VDW_factor
 #declare rTm_ = 1.10
 #declare rYb = 1.00 * VDW_factor
 #declare rYb_ = 1.10
 #declare rLu = 1.00 * VDW_factor
 #declare rLu_ = 1.10
 #declare rHf = 1.00 * VDW_factor
 #declare rHf_ = 1.10
 #declare rTa = 1.00 * VDW_factor
 #declare rTa_ = 1.10
 #declare rW = 1.00 * VDW_factor
 #declare rW_ = 1.10
 #declare rRe = 1.00 * VDW_factor
 #declare rRe_ = 1.10
 #declare rOs = 1.00 * VDW_factor
 #declare rOs_ = 1.10
 #declare rIr = 1.00 * VDW_factor
 #declare rIr_ = 1.10
 #declare rPt = 1.00 * VDW_factor
 #declare rPt_ = 1.10
 #declare rAu = 1.00 * VDW_factor
 #declare rAu_ = 1.10
 #declare rHg = 1.00 * VDW_factor
 #declare rHg_ = 1.10
 #declare rTl = 1.00 * VDW_factor
 #declare rTl_ = 1.10
 #declare rPb = 1.00 * VDW_factor
 #declare rPb_ = 1.10
 #declare rBi = 1.00 * VDW_factor
 #declare rBi_ = 1.10
 #declare rPo = 1.00 * VDW_factor
 #declare rPo_ = 1.10
 #declare rAt = 1.00 * VDW_factor
 #declare rAt_ = 1.10
 #declare rRn = 1.00 * VDW_factor
 #declare rRn_ = 1.10
 #declare rFr = 1.00 * VDW_factor
 #declare rFr_ = 1.10
 #declare rRa = 1.00 * VDW_factor
 #declare rRa_ = 1.10
 #declare rAc = 1.00 * VDW_factor
 #declare rAc_ = 1.10
 #declare rTh = 1.00 * VDW_factor
 #declare rTh_ = 1.10
 #declare rPa = 1.00 * VDW_factor
 #declare rPa_ = 1.10
 #declare rU = 1.00 * VDW_factor
 #declare rU_ = 1.10
 #declare rNp = 1.00 * VDW_factor
 #declare rNp_ = 1.10
 #declare rPu = 1.00 * VDW_factor
 #declare rPu_ = 1.10
 #declare rAm = 1.00 * VDW_factor
 #declare rAm_ = 1.10
 #declare rCm = 1.00 * VDW_factor
 #declare rCm_ = 1.10
 #declare rBk = 1.00 * VDW_factor
 #declare rBk_ = 1.10
 #declare rCf = 1.00 * VDW_factor
 #declare rCf_ = 1.10
 #declare rEs = 1.00 * VDW_factor
 #declare rEs_ = 1.10
 #declare rFm = 1.00 * VDW_factor
 #declare rFm_ = 1.10
 #declare rMd = 1.00 * VDW_factor
 #declare rMd_ = 1.10
 #declare rNo = 1.00 * VDW_factor
 #declare rNo_ = 1.10
 #declare rLr = 1.00 * VDW_factor
 #declare rLr_ = 1.10
 #declare rCA = 1.00 * VDW_factor * CA_relativeSize
 #declare rCA_ = 1.70
// ---- Radius for "joining" atoms ----
// when atom radii below are all set to 1.0, you obtain a smooth "sticks" model

// ---- some TEXT parameters ----
 #declare r_UserDist = .04   // radius of distances measurement lines
 #declare Label_scale = .4   // Text height in angstroms
 #declare Label_XDecal = 0  // Horizontal offset from CA
 #declare Label_YDecal = 0 // Vertical offset from CA

 #declare Label_ZDecal = (-0.5) // offset from CA toward camera

 #declare Dist_scale = .4   // Text height in angstroms
 #declare Dist_XDecal = (-.6) // Horizontal offset from middle of H-bond
 #declare Dist_YDecal =  0   // Vertical offset from middle of H-bond

 #declare Dist_ZDecal = (-.25)  // Depth offset from middle of H-bond

#declare Label_tex = texture { pigment { colour red 1.000 green 1.000 blue 0.000 } finish{ metallic }}
#declare LABEL_FINISH = finish {specular 1 roughness 0.001}
#declare Dist_tex = texture { pigment { colour red 1.000 green 1.000 blue 0.000 } finish{ metallic }}
//************ OBJECTS *********
#include "test.inc"



// ----- RNaseA -----
object{ A0_shape }   // PO41   
object{ A1_shape }   // DOD126 
object{ A2_shape }   // DOD128 
object{ A3_shape }   // DOD129 
object{ A4_shape }   // DOD131 
object{ A5_shape }   // DOD133 
object{ A6_shape }   // DOD135 
object{ A7_shape }   // DOD136 
object{ A8_shape }   // DOD137 
object{ A9_shape }   // DOD138 
object{ A10_shape }   // DOD140 
object{ A11_shape }   // DOD141 
object{ A12_shape }   // DOD142 
object{ A13_shape }   // DOD143 
object{ A14_shape }   // DOD145 
object{ A15_shape }   // DOD147 
object{ A16_shape }   // DOD149 
object{ A17_shape }   // DOD150 
object{ A18_shape }   // DOD151 
object{ A19_shape }   // DOD153 
object{ A20_shape }   // DOD154 
object{ A21_shape }   // DOD155 
object{ A22_shape }   // DOD156 
object{ A23_shape }   // DOD157 
object{ A24_shape }   // DOD158 
object{ A25_shape }   // DOD160 
object{ A26_shape }   // DOD161 
object{ A27_shape }   // DOD162 
object{ A28_shape }   // DOD163 
object{ A29_shape }   // DOD164 
object{ A30_shape }   // DOD165 
object{ A31_shape }   // DOD166 
object{ A32_shape }   // DOD167 
object{ A33_shape }   // DOD168 
object{ A34_shape }   // DOD169 
object{ A35_shape }   // DOD170 
object{ A36_shape }   // DOD171 
object{ A37_shape }   // DOD172 
object{ A38_shape }   // DOD175 
object{ A39_shape }   // DOD177 
object{ A40_shape }   // DOD178 
object{ A41_shape }   // DOD179 
object{ A42_shape }   // DOD180 
object{ A43_shape }   // DOD181 
object{ A44_shape }   // DOD182 
object{ A45_shape }   // DOD183 
object{ A46_shape }   // DOD184 
object{ A47_shape }   // DOD185 
object{ A48_shape }   // DOD186 
object{ A49_shape }   // DOD187 
object{ A50_shape }   // DOD188 
object{ A51_shape }   // DOD189 
object{ A52_shape }   // DOD190 
object{ A53_shape }   // DOD191 
object{ A54_shape }   // DOD192 
object{ A55_shape }   // DOD194 
object{ A56_shape }   // DOD195 
object{ A57_shape }   // DOD196 
object{ A58_shape }   // DOD197 
object{ A59_shape }   // DOD198 
object{ A60_shape }   // DOD199 
object{ A61_shape }   // DOD200 
object{ A62_shape }   // DOD201 
object{ A63_shape }   // DOD202 
object{ A64_shape }   // DOD203 
object{ A65_shape }   // DOD205 
object{ A66_shape }   // DOD206 
object{ A67_shape }   // DOD207 
object{ A68_shape }   // DOD208 
object{ A69_shape }   // DOD209 
object{ A70_shape }   // DOD210 
object{ A71_shape }   // DOD211 
object{ A72_shape }   // DOD212 
object{ A73_shape }   // DOD213 
object{ A74_shape }   // DOD214 
object{ A75_shape }   // DOD215 
object{ A76_shape }   // DOD216 
object{ A77_shape }   // DOD217 
object{ A78_shape }   // DOD218 
object{ A79_shape }   // DOD219 
object{ A80_shape }   // DOD220 
object{ A81_shape }   // DOD221 
object{ A82_shape }   // DOD222 
object{ A83_shape }   // DOD223 
object{ A84_shape }   // DOD228 
object{ A85_shape }   // DOD229 
object{ A86_shape }   // DOD233 
object{ A87_shape }   // DOD235 
object{ A88_shape }   // DOD238 
object{ A89_shape }   // DOD239 
object{ A90_shape }   // DOD240 
object{ A91_shape }   // DOD242 
object{ A92_shape }   // DOD243 
object{ A93_shape }   // DOD244 
object{ A94_shape }   // DOD246 
object{ A95_shape }   // DOD248 
object{ A96_shape }   // DOD249 
object{ A97_shape }   // DOD250 
object{ A98_shape }   // DOD251 
object{ A99_shape }   // DOD252 
object{ A100_shape }   // DOD253 
object{ A101_shape }   // DOD254 
object{ A102_shape }   // DOD255 
object{ A103_shape }   // DOD258 
object{ A104_shape }   // DOD259 
object{ A105_shape }   // DOD260 
object{ A106_shape }   // DOD261 
object{ A107_shape }   // DOD267 
object{ A108_shape }   // DOD268 
object{ A109_shape }   // DOD270 
object{ A110_shape }   // DOD271 
object{ A111_shape }   // DOD275 
object{ A112_shape }   // DOD276 
object{ A113_shape }   // DOD278 
object{ A114_shape }   // DOD284 
object{ A115_shape }   // DOD286 
object{ A116_shape }   // DOD287 
object{ A117_shape }   // DOD294 
object{ A118_shape }   // DOD296 
object{ A119_shape }   // DOD297 
object{ A120_shape }   // DOD301 
object{ A121_shape }   // DOD302 
object{ A122_shape }   // DOD303 
object{ A123_shape }   // DOD306 
object{ A124_shape }   // DOD313 
object{ A125_shape }   // DOD316 
object{ A126_shape }   // DOD319 
object{ A127_shape }   // DOD320 
object{ A128_shape }   // DOD321 

//************ CAMERA *********

camera { location < 0, 0, -150.6 >  // get closer to <0,0,0> to zoom in on the model
// rotate < 0, 2.000, 0>    //  uncomment to get  left Eye stereo view
// rotate < 0, -2.000, 0>   //  uncomment to get right Eye stereo view
 direction < 0, 0, 2.836>
 up <0, 1, 0>
 right <640/480, 0, 0>  // **NOTE:** do not forget to adjust this value according to final Width/Height rendering
 look_at <0, 0, 0>
}
//************ LIGHTS *********

#declare Intensity = 2
background { color rgb < 0.000, 0.000, 0.275 >} 
object { light_source {< -20.000, 20.000, -20.000 > color rgb Intensity*1.000 }}
//END